seqtools.hpp File Reference

Functions for working with sequences (other than alignment). More...

#include "resinfo.hpp"
#include "metadata.hpp"

Go to the source code of this file.

Namespaces
namespace	gemmi

Functions
constexpr double	gemmi::h2o_weight ()
double	gemmi::calculate_sequence_weight (const std::vector< std::string > &seq, double unknown=100.)
std::string	gemmi::one_letter_code (const std::vector< std::string > &seq)
std::string	gemmi::pdbx_one_letter_code (const std::vector< std::string > &seq, ResidueKind kind)
	Returns the format used in _entity_poly.pdbx_seq_one_letter_code, in which non-standard amino acids/nucleotides are represented by CCD codes in parenthesis, e.g.
ResidueKind	gemmi::sequence_kind (PolymerType ptype)
	used with expand_one_letter_sequence()

Detailed Description

Functions for working with sequences (other than alignment).

Definition in file seqtools.hpp.