gemmi.Topo class

Classes

class Angle

class Bond

class ChainInfo

class Chirality

class FinalChemComp

class Link

class Mod

class Plane

class ResInfo

class Rule

class Torsion

Methods

def adjust_hydrogen_distances(self, of: Restraints.DistanceOf, default_scale: float = 1.0) -> None

def find_missing_atoms(self, including_hydrogen: bool = False) -> typing.List[AtomAddress]

def first_bond_in_link(self, arg0: Link, /) -> Bond

def ideal_chiral_abs_volume(self, arg0: Chirality, /) -> float

def links_to_previous(self, arg0: Residue, /) -> TopoLinks

def set_cispeps_in_structure(self, arg0: Structure, /) -> None

Special methods

def __init__(self, /) -> None

Properties

angles: TopoAngles get

bonds: TopoBonds get

chain_infos: TopoChainInfos get

chirs: TopoChirs get

extras: TopoLinks get

planes: TopoPlanes get

torsions: TopoTorsions get