#include <seqalign.hpp>
Definition at line 70 of file seqalign.hpp.
◆ cigar_str()
| std::string gemmi::AlignmentResult::cigar_str |
( |
| ) |
const |
|
inline |
◆ input_length()
| std::size_t gemmi::AlignmentResult::input_length |
( |
int |
which | ) |
const |
|
inline |
◆ calculate_identity()
| double gemmi::AlignmentResult::calculate_identity |
( |
int |
which = 0 | ) |
const |
|
inline |
◆ backtrack_to_cigar()
| void gemmi::AlignmentResult::backtrack_to_cigar |
( |
const std::uint8_t * |
p, |
|
|
int |
i, |
|
|
int |
j |
|
) |
| |
|
inline |
◆ count_matches()
| void gemmi::AlignmentResult::count_matches |
( |
const std::vector< std::uint8_t > & |
query, |
|
|
const std::vector< std::uint8_t > & |
target |
|
) |
| |
|
inline |
◆ add_gaps()
| std::string gemmi::AlignmentResult::add_gaps |
( |
const std::string & |
s, |
|
|
unsigned |
which |
|
) |
| const |
|
inline |
◆ formatted()
| std::string gemmi::AlignmentResult::formatted |
( |
const std::string & |
a, |
|
|
const std::string & |
b |
|
) |
| const |
|
inline |
◆ push_cigar()
| void gemmi::AlignmentResult::push_cigar |
( |
std::uint32_t |
op, |
|
|
int |
len |
|
) |
| |
|
inline |
◆ score
| int gemmi::AlignmentResult::score = 0 |
◆ match_count
| int gemmi::AlignmentResult::match_count = 0 |
◆ match_string
| std::string gemmi::AlignmentResult::match_string |
◆ cigar
| std::vector<Item> gemmi::AlignmentResult::cigar |
The documentation for this struct was generated from the following file:
