Gemmi C++ API
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#include <seqalign.hpp>
Static Public Member Functions | |
static const AlignmentScoring * | simple () |
static const AlignmentScoring * | partial_model () |
static const AlignmentScoring * | blosum62 () |
Public Attributes | |
int | match |
int | mismatch |
int | gapo |
int | gape |
int | good_gapo |
int | bad_gapo |
std::vector< std::int8_t > | score_matrix |
std::vector< std::string > | matrix_encoding |
Definition at line 19 of file seqalign.hpp.
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inlinestatic |
Definition at line 30 of file seqalign.hpp.
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inlinestatic |
Definition at line 35 of file seqalign.hpp.
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inlinestatic |
Definition at line 39 of file seqalign.hpp.
int gemmi::AlignmentScoring::match |
Definition at line 20 of file seqalign.hpp.
int gemmi::AlignmentScoring::mismatch |
Definition at line 21 of file seqalign.hpp.
int gemmi::AlignmentScoring::gapo |
Definition at line 22 of file seqalign.hpp.
int gemmi::AlignmentScoring::gape |
Definition at line 23 of file seqalign.hpp.
int gemmi::AlignmentScoring::good_gapo |
Definition at line 25 of file seqalign.hpp.
int gemmi::AlignmentScoring::bad_gapo |
Definition at line 26 of file seqalign.hpp.
std::vector<std::int8_t> gemmi::AlignmentScoring::score_matrix |
Definition at line 27 of file seqalign.hpp.
std::vector<std::string> gemmi::AlignmentScoring::matrix_encoding |
Definition at line 28 of file seqalign.hpp.