gemmi::Ccp4< T > Struct Template Reference

#include <ccp4.hpp>

Inheritance diagram for gemmi::Ccp4< T >:

Public Member Functions
void	prepare_ccp4_header_except_mode_and_stats ()
void	update_ccp4_header (int mode=-1, bool update_stats=true)
	If the header is empty, prepare it; otherwise, update only MODE and, if update_stats==true, also DMIN, DMAX, DMEAN and RMS.
bool	full_cell () const
template<typename Stream >
void	read_ccp4_header (Stream &f, const std::string &path)
void	setup (T default_value, MapSetup mode=MapSetup::Full)
void	set_extent (const Box< Fractional > &box)
template<typename Stream >
void	read_ccp4_stream (Stream f, const std::string &path)
void	read_ccp4_file (const std::string &path)
void	read_ccp4_from_memory (const char *data, size_t size, const std::string &name)
template<typename Input >
void	read_ccp4 (Input &&input)
void	write_ccp4_map (const std::string &path) const
Public Member Functions inherited from gemmi::Ccp4Base
void *	header_word (int w)
const void *	header_word (int w) const
int32_t	header_i32 (int w) const
std::array< int, 3 >	header_3i32 (int w) const
float	header_float (int w) const
std::string	header_str (int w, size_t len=80) const
void	set_header_i32 (int w, int32_t value)
void	set_header_3i32 (int w, int32_t x, int32_t y, int32_t z)
void	set_header_float (int w, float value)
void	set_header_str (int w, const std::string &str)
std::array< int, 3 >	axis_positions () const
double	header_rfloat (int w) const
Box< Fractional >	get_extent () const
bool	has_skew_transformation () const
Transform	get_skew_transformation () const
Position	get_origin () const

Static Public Member Functions
static int	mode_for_data ()

Public Attributes
Grid< T >	grid
Public Attributes inherited from gemmi::Ccp4Base
DataStats	hstats
std::vector< int32_t >	ccp4_header
bool	same_byte_order = true

Detailed Description

template<typename T = float>
struct gemmi::Ccp4< T >

Definition at line 143 of file ccp4.hpp.

Member Function Documentation

prepare_ccp4_header_except_mode_and_stats()

template<typename T = float>

void gemmi::Ccp4< T >::prepare_ccp4_header_except_mode_and_stats ( )

inline

Definition at line 147 of file ccp4.hpp.

update_ccp4_header()

template<typename T = float>

void gemmi::Ccp4< T >::update_ccp4_header ( int  mode = -1, bool  update_stats = true  )

inline

If the header is empty, prepare it; otherwise, update only MODE and, if update_stats==true, also DMIN, DMAX, DMEAN and RMS.

Definition at line 187 of file ccp4.hpp.

mode_for_data()

template<typename T = float>

static int gemmi::Ccp4< T >::mode_for_data ( )

inlinestatic

Definition at line 212 of file ccp4.hpp.

full_cell()

template<typename T = float>

bool gemmi::Ccp4< T >::full_cell ( ) const

inline

Definition at line 224 of file ccp4.hpp.

read_ccp4_header()

template<typename T = float>

template<typename Stream >

void gemmi::Ccp4< T >::read_ccp4_header ( Stream &  f, const std::string &  path  )

inline

Definition at line 235 of file ccp4.hpp.

setup()

template<typename T >

void gemmi::Ccp4< T >::setup	(	T	default_value,
		MapSetup	mode = MapSetup::Full
	)

Definition at line 388 of file ccp4.hpp.

set_extent()

template<typename T >

void gemmi::Ccp4< T >::set_extent

(

const Box< Fractional > &

box

)

Definition at line 444 of file ccp4.hpp.

read_ccp4_stream()

template<typename T >

template<typename Stream >

void gemmi::Ccp4< T >::read_ccp4_stream	(	Stream	f,
		const std::string &	path
	)

Definition at line 359 of file ccp4.hpp.

read_ccp4_file()

template<typename T = float>

void gemmi::Ccp4< T >::read_ccp4_file ( const std::string &  path )

inline

Definition at line 284 of file ccp4.hpp.

read_ccp4_from_memory()

template<typename T = float>

void gemmi::Ccp4< T >::read_ccp4_from_memory ( const char *  data, size_t  size, const std::string &  name  )

inline

Definition at line 289 of file ccp4.hpp.

read_ccp4()

template<typename T = float>

template<typename Input >

void gemmi::Ccp4< T >::read_ccp4 ( Input &&  input )

inline

Definition at line 295 of file ccp4.hpp.

write_ccp4_map()

template<typename T >

void gemmi::Ccp4< T >::write_ccp4_map

(

const std::string &

path

)

const

Definition at line 472 of file ccp4.hpp.

Member Data Documentation

grid

template<typename T = float>

Grid<T> gemmi::Ccp4< T >::grid

Definition at line 144 of file ccp4.hpp.

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The documentation for this struct was generated from the following file:

• /home/wojdyr/gemmi/gemmi/include/gemmi/ccp4.hpp