gemmi::ResidueSpan Struct Reference

#include <model.hpp>

Inheritance diagram for gemmi::ResidueSpan:

Classes
struct	GroupingProxy

Public Types
using	Parent = MutableVectorSpan< Residue >
Public Types inherited from gemmi::MutableVectorSpan< Residue >
using	vector_type = std::vector< typename Span< Residue >::value_type >
using	iterator = typename Span< Residue >::iterator
Public Types inherited from gemmi::Span< Item >
using	iterator = Item *
using	const_iterator = Item const *
using	element_type = Item
using	value_type = typename std::remove_cv< Item >::type

Public Member Functions
	ResidueSpan ()=default
	ResidueSpan (Parent &&span)
	ResidueSpan (vector_type &v, iterator begin, std::size_t n)
int	length () const
SeqId::OptionalNum	extreme_num (bool label, int sign) const
UniqProxy< Residue, ResidueSpan >	first_conformer ()
ConstUniqProxy< Residue, ResidueSpan >	first_conformer () const
GroupingProxy	residue_groups ()
const std::string &	subchain_id () const
ResidueGroup	find_residue_group (SeqId id)
std::vector< std::string >	extract_sequence () const
ConstResidueGroup	find_residue_group (SeqId id) const
SeqId	label_seq_id_to_auth (SeqId::OptionalNum label_seq_id) const
SeqId::OptionalNum	auth_seq_id_to_label (SeqId auth_seq_id) const
Public Member Functions inherited from gemmi::MutableVectorSpan< Residue >
	MutableVectorSpan ()=default
	MutableVectorSpan (Span< Residue > &&p, vector_type *v)
	MutableVectorSpan (vector_type &v, iterator begin, std::size_t n)
MutableVectorSpan< Residue >	sub (Iter first, Iter last)
MutableVectorSpan< Residue >	subspan (F &&func)
MutableVectorSpan< const Residue >	subspan (F &&func) const
iterator	insert (iterator pos, Residue &&item)
void	erase (iterator pos)
bool	is_beginning () const
bool	is_ending () const
Public Member Functions inherited from gemmi::Span< Item >
	Span ()=default
	Span (iterator begin, std::size_t n)
template<typename T = Item>
	Span (const Span< value_type > &o, typename std::enable_if< std::is_const< T >::value >::type *=0)
void	set_begin (iterator begin)
void	set_size (std::size_t n)
const_iterator	begin () const
const_iterator	end () const
iterator	begin ()
iterator	end ()
Item &	front ()
const Item &	front () const
Item &	back ()
const Item &	back () const
const Item &	operator[] (std::size_t i) const
Item &	operator[] (std::size_t i)
Item &	at (std::size_t i)
const Item &	at (std::size_t i) const
std::size_t	size () const
bool	empty () const
	operator bool () const
template<typename Iter >
Span< Item >	sub (Iter first, Iter last)
template<typename F , typename V = Item>
Span< V >	subspan (F &&func)
template<typename F >
Span< const value_type >	subspan (F &&func) const
Span &	children ()
const Span &	children () const

Additional Inherited Members
Public Attributes inherited from gemmi::Span< Item >
friend	Span< const value_type >
friend	MutableVectorSpan< value_type >

Detailed Description

Definition at line 371 of file model.hpp.

Member Typedef Documentation

Parent

using gemmi::ResidueSpan::Parent = MutableVectorSpan<Residue>

Definition at line 372 of file model.hpp.

Constructor & Destructor Documentation

ResidueSpan() [1/3]

gemmi::ResidueSpan::ResidueSpan ( )

default

ResidueSpan() [2/3]

gemmi::ResidueSpan::ResidueSpan ( Parent &&  span )

inline

Definition at line 375 of file model.hpp.

ResidueSpan() [3/3]

gemmi::ResidueSpan::ResidueSpan ( vector_type &  v, iterator  begin, std::size_t  n  )

inline

Definition at line 376 of file model.hpp.

Member Function Documentation

length()

int gemmi::ResidueSpan::length ( ) const

inline

Definition at line 378 of file model.hpp.

extreme_num()

SeqId::OptionalNum gemmi::ResidueSpan::extreme_num ( bool  label, int  sign  ) const

inline

Definition at line 379 of file model.hpp.

first_conformer() [1/2]

UniqProxy< Residue, ResidueSpan > gemmi::ResidueSpan::first_conformer ( )

inline

Definition at line 382 of file model.hpp.

first_conformer() [2/2]

ConstUniqProxy< Residue, ResidueSpan > gemmi::ResidueSpan::first_conformer ( ) const

inline

Definition at line 383 of file model.hpp.

residue_groups()

ResidueSpan::GroupingProxy gemmi::ResidueSpan::residue_groups ( )

inline

Definition at line 443 of file model.hpp.

subchain_id()

const std::string & gemmi::ResidueSpan::subchain_id ( ) const

inline

Definition at line 385 of file model.hpp.

find_residue_group() [1/2]

ResidueGroup gemmi::ResidueSpan::find_residue_group ( SeqId  id )

inline

Definition at line 422 of file model.hpp.

extract_sequence()

std::vector< std::string > gemmi::ResidueSpan::extract_sequence ( ) const

inline

Definition at line 387 of file model.hpp.

find_residue_group() [2/2]

ConstResidueGroup gemmi::ResidueSpan::find_residue_group ( SeqId  id ) const

inline

Definition at line 425 of file model.hpp.

label_seq_id_to_auth()

SeqId gemmi::ResidueSpan::label_seq_id_to_auth ( SeqId::OptionalNum  label_seq_id ) const

inline

Definition at line 389 of file model.hpp.

auth_seq_id_to_label()

SeqId::OptionalNum gemmi::ResidueSpan::auth_seq_id_to_label ( SeqId  auth_seq_id ) const

inline

Definition at line 392 of file model.hpp.

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The documentation for this struct was generated from the following file:

• /home/wojdyr/gemmi/gemmi/include/gemmi/model.hpp