seqalign.hpp File Reference

Simple pairwise sequence alignment. More...

#include <cstdint>
#include <algorithm>
#include <map>
#include <string>
#include <vector>
#include "fail.hpp"

Go to the source code of this file.

Classes
struct	gemmi::AlignmentScoring
struct	gemmi::AlignmentResult
struct	gemmi::AlignmentResult::Item

Namespaces
namespace	gemmi

Functions
AlignmentResult	gemmi::align_sequences (const std::vector< std::uint8_t > &query, const std::vector< std::uint8_t > &target, const std::vector< int > &target_gapo, std::uint8_t m, const AlignmentScoring &scoring)
	All values in query and target must be less then m.
AlignmentResult	gemmi::align_string_sequences (const std::vector< std::string > &query, const std::vector< std::string > &target, const std::vector< int > &target_gapo, const AlignmentScoring *scoring)

Detailed Description

Simple pairwise sequence alignment.

Definition in file seqalign.hpp.